The Filmfare Best Actor Award is given by the Filmfare magazine as part of its annual Filmfare Awards South for excellence in Malayalam films.
| Year | Winner | Movie (s) | Role (s) |
|---|---|---|---|
| 1984 | Mammootty | Adiyozhukkukal | Karunan |
| 1985 | Mammootty | Yathra Nirakkoottu |
Unnikrishnan Ravi Varma |
| 1986 | Mohanlal | Sanmasullavarkku Samadhaanam | Gopalakrishna Panicker |
| 1988 | Mohanlal | Padamudra | |
| 1990 | Mammootty | Mathilukal | Vaikom Basheer |
| 1991 | Mammootty | Amaram | Achuthan Kutty |
| 1993 | Mohanlal | Devasuram | Mangalassery Neelakandan |
| 1994 | Mohanlal | Pavithram | Unnikrishnan |
| 1995 | Mohanlal | Sphadikam | Thomas Chacko |
| 1997 | Mammootty | Bhoothakkannadi | Vidyadharan |
| 1999 | Mohanlal | Vaanaprastham | Kunhikuttan |
| 2001 | Mammootty | Arayannangalude Veedu | Ravindranath |
| 2004 | Mammootty | Kaazhcha | Madhavan |
| 2005 | Mohanlal | Thanmatra | Ramesan Nair |
| 2006 | Mammootty | Karutha Pakshikal | Murugan
|
| 2007 | Mohanlal | Paradesi | Valiyakatthu Moosa |
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